PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435773.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 21922.8 Da    PI: 6.3674
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr+g+lKKA+ELS+LCda+vav++fs++g+ly++ss
  XP_016435773.1  9 KRIEDKSSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRGRLYDFSS 59
                    79***********************************************96 PP
2K-box31.95.6e-12791621191
           K-box  11 eakaeslqqelak...LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                     e+ +e l++e++k        e Lq+  R+l    +++Ls+ +L +Le+qL+++l + Rs K++ll e+ ++l ++   +++e 
  XP_016435773.1  79 ESSTEVLDTEHSKyssFMTVGELLQTVERQLEEPAVDDLSVTDLVHLEDQLQTALMQARSSKEKLLSEENKHLENQIATTKNER 162
                     44444455554441115566789************************************************9998887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.665161IPR002100Transcription factor, MADS-box
CDDcd002653.10E-36273No hitNo description
SuperFamilySSF554551.44E-30279IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.20185179IPR002487Transcription factor, K-box
PfamPF014868.3E-793162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKSSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RGRLYDFSST  60
NSLTEIVQQY HSHVEAEKES STEVLDTEHS KYSSFMTVGE LLQTVERQLE EPAVDDLSVT  120
DLVHLEDQLQ TALMQARSSK EKLLSEENKH LENQIATTKN EREVTNGTMA LDFTNLAPAS  180
MNCRQQKATL NFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21187187Myocyte-specific enhancer factor 2B
1tqe_Q3e-21187187Myocyte-specific enhancer factor 2B
1tqe_R3e-21187187Myocyte-specific enhancer factor 2B
1tqe_S3e-21187187Myocyte-specific enhancer factor 2B
6c9l_A3e-21187187Myocyte-specific enhancer factor 2B
6c9l_B3e-21187187Myocyte-specific enhancer factor 2B
6c9l_C3e-21187187Myocyte-specific enhancer factor 2B
6c9l_D3e-21187187Myocyte-specific enhancer factor 2B
6c9l_E3e-21187187Myocyte-specific enhancer factor 2B
6c9l_F3e-21187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795053.11e-140PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_016435773.11e-140PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A1S3X7P81e-139A0A1S3X7P8_TOBAC; agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A1U7XVV41e-139A0A1U7XVV4_NICSY; agamous-like MADS-box protein AGL27 isoform X2
STRINGXP_009795052.11e-136(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.28e-42AGAMOUS-like 31