PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016435500.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 224aa MW: 24780.5 Da PI: 10.617

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016435500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	206.2	3.2e-63	9	224	96	301
GAGA_bind 96 pvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesad.er. 186 p+++qv +++++ ds+ ++ + + + + ++++ a pi++ a++ +++ ++k +++ +k k++k++ k+ ++ +++ kv++++++ + XP_016435500.1 9 PMASQVNHKVETFDSHFPWTHqDNRFPATKDGSKSKPYAAVPIRSVAPTGEQHMNVKVKAKRQKVKKNKMSaKELREIASKLFKVEQPENKpSAs 103 55566666666666655544414444444446777778888888888887777777655554444444444244343333333444333332222 PP GAGA_bind 187 ......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275 s+ ++ + n v D ++P+P CsCtG+ r+CYk G GWqS+CCttt+S yPLP+++ ++g R++grKm +ga++klL +Laa+ XP_016435500.1 104 krtkgeSRCGEATVTKNPNSVIADFCGVPPPFCSCTGVARRCYKCGVYGWQSSCCTTTLSEYPLPMNPSKPGNRLGGRKMTNGAYTKLLLRLAAQ 198 33222244444445556699************************************************************************* PP GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301 G dlsnpvDLk+hWAkHG nkf+ti+ XP_016435500.1 199 GRDLSNPVDLKNHWAKHGSNKFITIK 224 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.6E-40	1	224	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.9E-57	41	224	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MGPRPGSYPM ASQVNHKVET FDSHFPWTHQ DNRFPATKDG SKSKPYAAVP IRSVAPTGEQ 60 HMNVKVKAKR QKVKKNKMSA KELREIASKL FKVEQPENKP SASKRTKGES RCGEATVTKN 120 PNSVIADFCG VPPPFCSCTG VARRCYKCGV YGWQSSCCTT TLSEYPLPMN PSKPGNRLGG 180 RKMTNGAYTK LLLRLAAQGR DLSNPVDLKN HWAKHGSNKF ITIK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613159.1	1e-168	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
Refseq	XP_016435500.1	1e-168	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
TrEMBL	A0A1S3X692	1e-167	A0A1S3X692_TOBAC; protein BASIC PENTACYSTEINE7-like isoform X2
STRING	XP_009613158.1	1e-167	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	3e-50	basic pentacysteine 7