PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016435499.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 270aa MW: 30300 Da PI: 10.2675

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016435499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	206.1	3.7e-63	54	270	95	301
GAGA_bind 95 lpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesad.er 186 p+++qv +++++ ds+ ++ + + + + ++++ a pi++ a++ +++ ++k +++ +k k++k++ k+ ++ +++ kv++++++ + XP_016435499.1 54 YPMASQVNHKVETFDSHFPWTHqDNRFPATKDGSKSKPYAAVPIRSVAPTGEQHMNVKVKAKRQKVKKNKMSaKELREIASKLFKVEQPENKpSA 148 56666777777777766554442444444455677788888899888888877777775555544444444424444333333344443333222 PP GAGA_bind 187 .......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274 s+ ++ + n v D ++P+P CsCtG+ r+CYk G GWqS+CCttt+S yPLP+++ ++g R++grKm +ga++klL +Laa XP_016435499.1 149 skrtkgeSRCGEATVTKNPNSVIADFCGVPPPFCSCTGVARRCYKCGVYGWQSSCCTTTLSEYPLPMNPSKPGNRLGGRKMTNGAYTKLLLRLAA 243 233222244444444556699************************************************************************ PP GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301 +G dlsnpvDLk+hWAkHG nkf+ti+ XP_016435499.1 244 QGRDLSNPVDLKNHWAKHGSNKFITIK 270 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.6E-40	47	270	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.2E-57	85	270	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MTTPLPLYIP NIEKQETPYN FDHLLQLCCV LFNFTILSFK VWFETQMGPR PGSYPMASQV 60 NHKVETFDSH FPWTHQDNRF PATKDGSKSK PYAAVPIRSV APTGEQHMNV KVKAKRQKVK 120 KNKMSAKELR EIASKLFKVE QPENKPSASK RTKGESRCGE ATVTKNPNSV IADFCGVPPP 180 FCSCTGVARR CYKCGVYGWQ SSCCTTTLSE YPLPMNPSKP GNRLGGRKMT NGAYTKLLLR 240 LAAQGRDLSN PVDLKNHWAK HGSNKFITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613158.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X1
Refseq	XP_016435499.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X1
Swissprot	O82286	3e-47	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A1S3X6F2	0.0	A0A1S3X6F2_TOBAC; protein BASIC PENTACYSTEINE7-like isoform X1
STRING	XP_009613158.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13714	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	1e-49	basic pentacysteine 7