PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435399.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 448aa    MW: 49670.3 Da    PI: 6.7885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13276322455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+ +P+       +++Ka+ L  Av YI++L+
  XP_016435399.1 276 NHVEAERQRREKLNHRFYALRSAVPNV-----SRMDKASLLSDAVSYINQLK 322
                     799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.9E-1771153IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142157.1E-16159211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.939272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-17275334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-14275325No hitNo description
Gene3DG3DSA:4.10.280.109.4E-16276331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10276321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDGLFPLISC LLVLTPSQLL GFHYYYYSIN YTVLSSCCFL FSSTYIKFMG SSSPMVDSSL  60
PQGDNQLPLG LQHMLQYVIK SQPDWWAYAI FWQTSTDDEG KPFLAWGDGY FQGAKGGAAV  120
NNKGSSSDAA QSERKKVIRG IQALIDGDNN NLMDDGAAQF QVYSCERAKE AQIHGIQTLL  180
CIPTSNGVLE LGSAHLIKEN FDLVQQVKSL FLSCPPIHFL EKSICFADIG LVTGLQQDNE  240
DKLEKQQLDS DKKAVAKKRG RKPKGGDNNI NMAALNHVEA ERQRREKLNH RFYALRSAVP  300
NVSRMDKASL LSDAVSYINQ LKAKVDELEL QLIDHSSSSN KKQKSNESGE NQSTNTSVDQ  360
ELRPNSSLEV EVKIVGPDAM IRVQSENVNY PSAKLMSALR HLQLQVHHAS ISSVNNLMLH  420
DVVVKVPQGL RTEDGLRTAL ITTLESNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-22275325757Transcription factor MYC2
5gnj_B3e-22275325757Transcription factor MYC2
5gnj_E3e-22275325757Transcription factor MYC2
5gnj_F3e-22275325757Transcription factor MYC2
5gnj_G3e-22275325757Transcription factor MYC2
5gnj_I3e-22275325757Transcription factor MYC2
5gnj_M3e-22275325757Transcription factor MYC2
5gnj_N3e-22275325757Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623539.10.0PREDICTED: transcription factor MYC3-like isoform X2
RefseqXP_016435399.10.0PREDICTED: transcription factor MYC3-like isoform X2
TrEMBLA0A1S3X6520.0A0A1S3X652_TOBAC; transcription factor MYC3-like isoform X2
STRINGXP_009623534.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-76bHLH family protein