PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433836.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 267aa    MW: 30029 Da    PI: 8.0764
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18183217135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_016433836.1 183 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 217
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.1E-812266IPR016679Transcription factor, GATA, plant
SMARTSM004012.0E-15177227IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.477177213IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15178241No hitNo description
Gene3DG3DSA:3.30.50.109.7E-14181215IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.02E-13182229No hitNo description
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003207.2E-16183217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDVYGAEVFR IDDLLDFSND EIFSSSTGSS SNKTTSFDLN HQYHPPHSDN INPAAGSYYN  60
PLIPNCADFT DKLCVPSDDV AELEWLSNFV EDSSNNYPSN SLTGTINLNS NNTSFHSKSR  120
SKRSRATTAN TSWASSLQKA HQKPTVDEPN QSPQYNNNNN TMKPKKESSR ERSSEMSDIP  180
RKCTHCASEK TPQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTQHSNSHRK  240
VMELRRQKEV QQQSQQQGMY GHHFQVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433836.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497413e-70GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1S3X1Y60.0A0A1S3X1Y6_TOBAC; GATA transcription factor
STRINGXP_009770686.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-59GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]