PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016433393.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 325aa MW: 37835.1 Da PI: 8.7298

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016433393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.4	4.9e-15	3	45	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n++ r+ t+ kR++ + KK +ELS+LC+++ ++i++++++ XP_016433393.1 3 LIKNERSRNSTYQKRKKSLEKKSNELSILCQVKLCMIVYGPKD 45 59**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.09E-15	1	84	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.83E-16	1	55	No hit	No description
PROSITE profile	PS50066	13.75	1	44	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.4E-8	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-15	4	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MELIKNERSR NSTYQKRKKS LEKKSNELSI LCQVKLCMIV YGPKDSEPTI WPDKDTVLSL 60 IYSYRARSDD DKRLRTHDLS FYFRDLTRKV EIESSKLRKR NFEAKYPTWD QHYDSLSSDQ 120 LKQLSALLGA KIEFMKQRLE LLKGTQTISL EDMHAMSFLG KQVTQPNTQC VMQSLVRISS 180 LQLEIIEQQQ QQLVPPLNFP ETEIMPFGQH QIIQRDNHQS SGISTGIPHC TGTGYEPHLA 240 ILNASGNVIE SQRCVTGIWP EIIICCLAIM LINNLNHCVI LFQWRHLITT FISIILCCQM 300 LQLLIKCILL RRKSIMKWEI FNYQI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BA000042	1e-33	BA000042.1 Nicotiana tabacum mitochondrial DNA, complete genome.
GenBank	KM207679	1e-33	KM207679.1 Nicotiana tabacum/Hyoscyamus niger cybrid clone contig2 mitochondrion, complete sequence.
GenBank	KR071121	1e-33	KR071121.1 UNVERIFIED: Nicotiana tabacum strain ms zhongyan100 mitochondrion sequence.
GenBank	KR780036	1e-33	KR780036.1 Nicotiana tabacum cultivar zhongyan 100 mitochondrion, complete genome.
GenBank	KT997964	1e-33	KT997964.1 Nicotiana sylvestris cultivar TW 137 mitochondrion, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016433393.1	0.0	PREDICTED: agamous-like MADS-box protein AGL92
TrEMBL	A0A1S3X128	0.0	A0A1S3X128_TOBAC; agamous-like MADS-box protein AGL92
STRING	XP_009596094.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2457	22	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-08	AGAMOUS-like 82