PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 188aa MW: 21954 Da PI: 9.7446 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.9 | 1.3e-29 | 28 | 81 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LHe F++ ve+LGG +kAtPk++l++m +kgL ++hvkSHLQ+YR XP_016432871.1 28 PRLRWTPQLHELFIQSVESLGGRNKATPKRVLQMMAIKGLKISHVKSHLQMYRN 81 9****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 27 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-22 | 28 | 82 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.54E-13 | 28 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-7 | 29 | 80 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSYNAPEMRR ISSKKMRDIR KYKKSLAPRL RWTPQLHELF IQSVESLGGR NKATPKRVLQ 60 MMAIKGLKIS HVKSHLQMYR NMKEHPSLHV VMPDFNLSST LLVSKRSSRK QNESGSQFCC 120 KERNSSENNG ENIHYNDFQE AEGSISSGMT KEEEQYCEKE INFWPVDNHK YFDPTMENTH 180 INLDLSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 29 | 83 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432871.1 | 1e-140 | PREDICTED: probable transcription factor KAN4 | ||||
TrEMBL | A0A1S3WZA7 | 1e-139 | A0A1S3WZA7_TOBAC; probable transcription factor KAN4 | ||||
STRING | XP_009601033.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9459 | 13 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 7e-26 | G2-like family protein |