PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804554.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 302aa    MW: 33894 Da    PI: 9.3571
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.5e-32119172255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_009804554.1 119 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 172
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.68E-15116173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28117173IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-24119172IPR006447Myb domain, plants
PfamPF002494.8E-7120171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRDTISSSMP DLSLQISLPS NILKCDNHSF STESGSSGGS DLSHENNGIF RPQKAFNNLP  60
LLTSFEPTLS LGFGQLPNRN LQRYHQHQHH QQYQPQIYGR DFKRSSRMIS GVKRSVRAPR  120
MRWTSTLHAH FVHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKSTDKTT  180
AKGMTEIFVN PNRGNNISEY EKSCEEIDAM TDPSVSLSNT IPQNAHIRIP SSFMTETNAW  240
SHSNRERAFP YPHIYSNMKV IEPADNSTSS DTLVNLEFTL GRPSLNMGHA GSSSNDSTLL  300
KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-17120174458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719893e-74KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
GenBankKP2719903e-74KP271990.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-293 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804554.10.0PREDICTED: probable transcription factor KAN4 isoform X2
RefseqXP_016451280.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A1S3YGM70.0A0A1S3YGM7_TOBAC; probable transcription factor KAN4
TrEMBLA0A1U7YZK00.0A0A1U7YZK0_NICSY; probable transcription factor KAN4 isoform X2
STRINGXP_009804553.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.18e-63G2-like family protein