PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804391.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 382aa    MW: 44396.9 Da    PI: 8.4312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067393323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cg sF  + +Lk+H+++H
  XP_009804391.1 73 CEECGASFQKPAHLKQHMQSH 93
                    *******************99 PP
2zf-C2H215.83.8e-05101125123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  +C  s++rk++L+rH+  H
  XP_009804391.1 101 FVCHidNCQSSYRRKDHLTRHLLQH 125
                     89*******************9887 PP
3zf-C2H214.30.00012130155123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp   C++ Fs + n++rH +  H
  XP_009804391.1 130 FECPvdGCKRAFSIQGNMTRHVKEmH 155
                     89********************9988 PP
4zf-C2H216.13.2e-05169193123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk F+  s Lk+H  +H
  XP_009804391.1 169 YVCSepRCGKGFKFASKLKKHEDSH 193
                     89*99****************9888 PP
5zf-C2H218.45.8e-06260284223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+  dC  +Fs+ksnL +H +  H
  XP_009804391.1 260 KCEfqDCQHTFSTKSNLIQHVKAvH 284
                     79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355392447IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.51E-869125No hitNo description
SMARTSM003550.00587193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3657198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-773101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM003550.069101125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286101130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-10102127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-6111156No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5128156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014130155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221130160IPR007087Zinc finger, C2H2
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-7164193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.19E-5167193No hitNo description
SMARTSM003550.59169193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385169198IPR007087Zinc finger, C2H2
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM003558.8201226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
SMARTSM0035513229250IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.0E-10241297No hitNo description
SMARTSM003550.0011259284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547259289IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6260286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-5287312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035512290316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280292316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAVKILGEMG EEKREVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEANE  60
DVKRKEGPKM NICEECGASF QKPAHLKQHM QSHSLEIERP FVCHIDNCQS SYRRKDHLTR  120
HLLQHQGKLF ECPVDGCKRA FSIQGNMTRH VKEMHDQRAS PEANLPKQYV CSEPRCGKGF  180
KFASKLKKHE DSHVKLETME ALCLEPGCMK HFTNEKCLKE HIESCHQHIV CEICGTKQLK  240
KNIKRHLRTH EEESTSERIK CEFQDCQHTF STKSNLIQHV KAVHLGDKPF SCGIAGCGMR  300
FAFKHVRDRH EKSGCHVYTP GDFVEADEQF RSRPRGGRKR KLPVFEAIMR KRITPPCGTD  360
PVFYQGSEYL SWLLSAESDE EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-167522119155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-167522119155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332340RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0986000.0KX098600.1 Nicotiana benthamiana transcription factor IIIA 9ZF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804391.10.0PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_016477868.10.0PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-137TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S4AN430.0A0A1S4AN43_TOBAC; transcription factor IIIA-like isoform X1
TrEMBLA0A1U7YQZ70.0A0A1U7YQZ7_NICSY; transcription factor IIIA-like isoform X1
STRINGXP_009804391.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-132transcription factor IIIA