PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009804164.1

Common Name

STF1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 399aa MW: 44871.6 Da PI: 7.172

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009804164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.6	3.8e-22	80	139	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ XP_009804164.1 80 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 139 7***************99************************************97 PP
2	Wus_type_Homeobox	115.4	2.8e-37	79	141	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_009804164.1 79 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 141 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.5E-5	77	144	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-9	80	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-12	80	145	IPR009057	Homeodomain-like
Pfam	PF00046	7.0E-20	80	139	IPR001356	Homeobox domain
CDD	cd00086	2.07E-6	81	141	No hit	No description
PROSITE profile	PS50071	11.256	85	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048513	Biological Process	animal organ development
GO:0099402	Biological Process	plant organ development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MWMMGYNDGG DFNMQDSFNG RKLRPLMPRV PHLPTANIST NPTCLRSIHG ENFVALNHHQ 60 LAMSEQNKRD FNTQQLVVSS RWNPTPEQLQ TLEELYRRGT RTPSAEQIQH ITAQLRRYGK 120 IEGKNVFYWF QNHKARERQK RRRQLESAAG GGAANAAGGG DDQSRSNCNP ENTERKESGA 180 NRTGFEIEQT KNWPSPTNCS TLAEKTVATT KAAAAGGVAE CRVAAERWIP FDEGEQRRSL 240 LLADQRNATW QMMHLSCSPP TSTTPHHHLM NINSSTAAIS NTISGTTSPI ICSSNTPSTP 300 RTTMEPKQLF KTKDHLNIFI APFRTDNRKH ENMENIVGDE GQEESQTLEL FPLRSSNDNN 360 DDNNFSEKDE VEISGADANS NSNFSGSHYQ FFEFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MWMMGYNDGG DFNMQDSFNG RKLRPLMPRV PHLPTANIST NPTCLRSIHG ENFVALNHHQ  60
LAMSEQNKRD FNTQQLVVSS RWNPTPEQLQ TLEELYRRGT RTPSAEQIQH ITAQLRRYGK  120
IEGKNVFYWF QNHKARERQK RRRQLESAAG GGAANAAGGG DDQSRSNCNP ENTERKESGA  180
NRTGFEIEQT KNWPSPTNCS TLAEKTVATT KAAAAGGVAE CRVAAERWIP FDEGEQRRSL  240
LLADQRNATW QMMHLSCSPP TSTTPHHHLM NINSSTAAIS NTISGTTSPI ICSSNTPSTP  300
RTTMEPKQLF KTKDHLNIFI APFRTDNRKH ENMENIVGDE GQEESQTLEL FPLRSSNDNN  360
DDNNFSEKDE VEISGADANS NSNFSGSHYQ FFEFLPLKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF276253	0.0	JF276253.1 Nicotiana sylvestris STENOFOLIA 1 (STF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804164.1	0.0	PREDICTED: WUSCHEL-related homeobox 1
Refseq	XP_016437977.1	0.0	PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBL	A0A1S3XDR4	0.0	A0A1S3XDR4_TOBAC; WUSCHEL-related homeobox 1-like
TrEMBL	A0A1U7YYD7	0.0	A0A1U7YYD7_NICSY; WUSCHEL-related homeobox 1
STRING	XP_009804164.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4681	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-66	WUSCHEL related homeobox 1

Publications ? help Back to Top
Tadege M, et al. STENOFOLIA regulates blade outgrowth and leaf vascular patterning in Medicago truncatula and Nicotiana sylvestris. Plant Cell, 2011. 23(6): p. 2125-42 [PMID:21719692]