PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009803760.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 345aa MW: 39339.3 Da PI: 10.4285

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.8	1.1e-39	83	233	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 ++k+ r+ski T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WL+ ++k ai elt+ + s+c XP_009803760.1 83 PKKRERSSKILTSQGPRDRRVRLSIAIARKFFDLQEMLGFDKPSKTLDWLFSNSKLAIEELTNWsthqdhdpkiagatK----SSC--------- 164 6899*********************************************************9544444444433220....222......... PP TCP 83 snsssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 ++ ++ ++ k ak+kk+ k++a+ l+l esr karararert +km + XP_009803760.1 165 DETAKHcasdwedlaittnegleRKPKRLAKEKKEVKDEATDLALVVrESRVKARARARERTIKKMWSR 233 211111223333444445555548888888999999999999999988***************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-36	84	231	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.578	85	143	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.537	212	229	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MFPASNSTGN PPPHPSLSFH SSSPFLGLNG NQILLHHHQN QFSSHHFAKN NMTLSANNII 60 NSPNYHQNHS DNSLRSFPIN KKPKKRERSS KILTSQGPRD RRVRLSIAIA RKFFDLQEML 120 GFDKPSKTLD WLFSNSKLAI EELTNWSTHQ DHDPKIAGAT KSSCDETAKH CASDWEDLAI 180 TTNEGLERKP KRLAKEKKEV KDEATDLALV VRESRVKARA RARERTIKKM WSRIETSQRS 240 TSRLIKSSFF LKKDIREMEE QFCKNKLQAS QEIANKEIIQ GSGVTKIKTK PSLILGFHPN 300 FYAPIESSTT HYGSSSFNTE NWDKGTTSEL QGRWKQLDSC HSNQI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MFPASNSTGN PPPHPSLSFH SSSPFLGLNG NQILLHHHQN QFSSHHFAKN NMTLSANNII  60
NSPNYHQNHS DNSLRSFPIN KKPKKRERSS KILTSQGPRD RRVRLSIAIA RKFFDLQEML  120
GFDKPSKTLD WLFSNSKLAI EELTNWSTHQ DHDPKIAGAT KSSCDETAKH CASDWEDLAI  180
TTNEGLERKP KRLAKEKKEV KDEATDLALV VRESRVKARA RARERTIKKM WSRIETSQRS  240
TSRLIKSSFF LKKDIREMEE QFCKNKLQAS QEIANKEIIQ GSGVTKIKTK PSLILGFHPN  300
FYAPIESSTT HYGSSSFNTE NWDKGTTSEL QGRWKQLDSC HSNQI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM526948	1e-33	KM526948.1 Chionanthus virginicus TCP transcription factor (CYC2B) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803760.1	0.0	PREDICTED: transcription factor CYCLOIDEA-like
Refseq	XP_016462466.1	0.0	PREDICTED: transcription factor CYCLOIDEA-like
TrEMBL	A0A1S3ZDU9	0.0	A0A1S3ZDU9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBL	A0A1U7YYF6	0.0	A0A1U7YYF6_NICSY; transcription factor CYCLOIDEA-like
STRING	XP_009803760.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	7e-24	TCP domain protein 12