PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 230aa MW: 25768.9 Da PI: 10.7039 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.9 | 7.1e-16 | 160 | 213 | 4 | 57 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +Lkk+ ++l+ e+a XP_009802867.1 160 DRRNKRMIKNRESAARSRARKQAYMNELELEVAHLLEENARLKKQQQQLRLESA 213 689********************************************9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-14 | 157 | 221 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.507 | 159 | 211 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-14 | 160 | 212 | No hit | No description |
SuperFamily | SSF57959 | 1.19E-11 | 161 | 211 | No hit | No description |
Pfam | PF00170 | 7.0E-13 | 161 | 212 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 6.30E-26 | 161 | 215 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 164 | 179 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MWSSTSSRGI SSSSSKSSSS TSSSSSRSPF SPLNHHLNPR LKTMEEVWKD INLSSLQEHT 60 TTYSRDHDHH HQTANFNGMI LQDFLARPFA TDPPPPQAAS PVPATTMLNL NSVPELHFFG 120 QNSMLHPPTP ISQVPFEGLA SSAANGRKRI PEIENNSVGD RRNKRMIKNR ESAARSRARK 180 QAYMNELELE VAHLLEENAR LKKQQQQLRL ESAAQVPKKK SLYRTSTAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802867.1 | 1e-168 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-42 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1U7YFI0 | 1e-167 | A0A1U7YFI0_NICSY; FDb | ||||
STRING | XP_009802867.1 | 1e-168 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 1e-23 | basic region/leucine zipper motif 27 |