PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802821.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 170aa    MW: 19418.6 Da    PI: 5.6395
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.5e-133189563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    ++ +r+++NRe+ArrsR RK++ ++ L   v++L +eN +    ++  ++++ ++++e+
  XP_009802821.1 31 RKRKRMISNRESARRSRMRKQKHLDDLMAQVATLRKENNQILTSMNVTTQHYLNVEAEN 89
                    6789***********************************99999888888888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-102072No hitNo description
SMARTSM003383.6E-182791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.32992IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-123183No hitNo description
PfamPF001706.0E-103179IPR004827Basic-leucine zipper domain
CDDcd147021.57E-183282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASSSGTSSG SSLFLQNSGS EEDLQQLVDQ RKRKRMISNR ESARRSRMRK QKHLDDLMAQ  60
VATLRKENNQ ILTSMNVTTQ HYLNVEAENS ILRAQLAELN HRLESLNEII AFLDANNNCN  120
GLANMDHNQE EPYSFNFAQN EPMVDGFNMT NSWNYLCANQ PIMTADVLQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMISNRESARRSRMRKQK
24350RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0455700.0AY045570.1 Nicotiana tabacum bZIP transcription factor BZI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802821.11e-124PREDICTED: ocs element-binding factor 1-like
RefseqXP_016440531.11e-124PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L52e-47BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1U7YLF81e-122A0A1U7YLF8_NICSY; ocs element-binding factor 1-like
TrEMBLQ941L71e-122Q941L7_TOBAC; BZIP transcription factor BZI-2
STRINGXP_009802821.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-48basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]