PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802690.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 841aa    MW: 93134.4 Da    PI: 6.6501
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08109151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_009802690.1 109 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 151
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.23E-10104156IPR009057Homeodomain-like
PROSITE profilePS5129313.413105156IPR017884SANT domain
SMARTSM007173.2E-6106154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-5108154IPR009057Homeodomain-like
CDDcd001679.26E-6109152No hitNo description
PfamPF002493.5E-6109151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MLFPESASLT LKVECKASTS DDFNMQMEPQ VSLECDRCLH PETLMCKDGV SDDTQHPAAA  60
QPVITSEDHP AAQLSVLIYD HAVTQQVSLS QDQVMLQKPA KRQTRQWAAW TRQEEESFFS  120
ALRQVGKNFE KITSRVQSKN KDQVRHYYYR LVRRMNKLLG PELSLDAKNS KDTNAAMLRW  180
WSLLEKSSCK ASKLHLKPRR FKIFIETLES QLLKDRKKNV RRRPSQGESS STAAASLSSH  240
SRVSTNDSRT VKVVLLDNQD VQKFGSGKGS SLKRHVTMGV NRSNTKVDSS PVKNARHRRK  300
IGSVSTAAYK RWEKAAIAGV SLVADAAEHL ERATIDKDVG LVQNSQGING FEHVGKDVPS  360
LPTLSQNLLN ETNLQSCMKL KLQLFPVDEG TRRALEMDNH NPYLELTLSN RKKMSSILEH  420
LNRKWGSSSI ATGKLVLFPY HVQMENLVQS LRWTKDTTLS AADVYNLIGS PPVFRLRYGW  480
FPNSELGTFQ APLSSTTPFT QNTNTNITEE KNEEVLASSH GKLVRFSKEP LVSNPRMTVT  540
SSSTELSGES NLQATMGVNT YNSDHNETLL MHRRDNGAIT TEKQVEMGSK NSALSAGDWE  600
DSLTNISVGD LLSDAPDDEE TDCIESTLPG SSHFLQQMPF SCDSFDAAIA AHIYKHQSKA  660
ESQMALPPQA SSIWNAEDTC DAFAFQKDVA FRRTANNSSS NVGAENRQHI SQSSSLLLDA  720
GVKDLPGKME PLTDELAHED PVDECHAQAL GGSTKDLSGL SDIYWPDSLG PLELDAPSCR  780
YHSEDLILSD NSLGGLNRLI ASSLDAFQNC SFFGLDKKEP GSTVEAVETT SLADYKIGAK  840
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476041e-121EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence.
GenBankHG9755211e-121HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802690.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1U7YV930.0A0A1U7YV93_NICSY; TSL-kinase interacting protein 1 isoform X2
STRINGXP_009802688.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1