PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 845aa MW: 93646 Da PI: 6.6113 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.1e-08 | 109 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + XP_009802688.1 109 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 151 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.23E-10 | 104 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.413 | 105 | 156 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-6 | 106 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 108 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.31E-6 | 109 | 152 | No hit | No description |
Pfam | PF00249 | 3.5E-6 | 109 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MLFPESASLT LKVECKASTS DDFNMQMEPQ VSLECDRCLH PETLMCKDGV SDDTQHPAAA 60 QPVITSEDHP AAQLSVLIYD HAVTQQVSLS QDQVMLQKPA KRQTRQWAAW TRQEEESFFS 120 ALRQVGKNFE KITSRVQSKN KDQVRHYYYR LVRRMNKLLG PELSLDAKNS KDTNAAMLRW 180 WSLLEKSSCK ASKLHLKPRR FKIFIETLES QLLKDRKKNV RRRPSQGESS STAAASLSSH 240 SRVSTNDSRT VKVVLLDNQD VQKFGSGKGS SLKRHVTMGV NRSNTKVDSS PVKNARHRRK 300 IGSVSTAAYK RWEKAAIAGV SLVADAAEHL ERATIDKDVG LVQNSQGING FEHVGKDVPS 360 LPTLSQNLLN ETNLQSCMKL KLQLFPVDEG TRRALEMDNH NPYLELTLSN RKKMSSILEH 420 LNRKWGSSSI ATGKLVLFPY HVQMENLVQS LRWTKDTTLS AADVYNLIGS PPVFRLRYGW 480 FPNSELGTFQ APLSSTTPFT QNTNTNITEE KNEEVLASSH GKLVRFSKEP LVSNPRMTVT 540 SSSTELSGES NLQATMGVNT YNSDHNETLL MHRRDNGAIT TEKQVEMHDM QGSKNSALSA 600 GDWEDSLTNI SVGDLLSDAP DDEETDCIES TLPGSSHFLQ QMPFSCDSFD AAIAAHIYKH 660 QSKAESQMAL PPQASSIWNA EDTCDAFAFQ KDVAFRRTAN NSSSNVGAEN RQHISQSSSL 720 LLDAGVKDLP GKMEPLTDEL AHEDPVDECH AQALGGSTKD LSGLSDIYWP DSLGPLELDA 780 PSCRYHSEDL ILSDNSLGGL NRLIASSLDA FQNCSFFGLD KKEPGSTVEA VETTSLADYK 840 IGAKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF647604 | 1e-129 | EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence. | |||
GenBank | HG975521 | 1e-129 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802688.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A1U7YHS7 | 0.0 | A0A1U7YHS7_NICSY; TSL-kinase interacting protein 1 isoform X1 | ||||
STRING | XP_009802688.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8640 | 17 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | TSL-kinase interacting protein 1 |