PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802675.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 342aa    MW: 37189.7 Da    PI: 6.5648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802675.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.5e-17231265135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009802675.1 231 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 265
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-831319IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.479225261IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-16225275IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-14227288No hitNo description
Gene3DG3DSA:3.30.50.107.8E-14227262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-12230277No hitNo description
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
PfamPF003201.3E-14231265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEASDFFVSG YFSNAGDQQN PNNNNFTVDD LLDFSKEDEV MTDAFFDSIT ANSADSSTVT  60
VVDSCNSSVS GENGHFNGNL SCRSFTDAPF PSSELCVPYD DLAELEWLSN FVEESFSSDD  120
VQNLQLIPVT NINSAANNTT DSSSSATTIS AGTNSPPAFP ADTSVPGKAR SKRPRAAPCD  180
WSSRLQLLLS PTTSSSESNN SAANNNTSAT AKATKAPSKK RESIETPGRK CLHCASEKTP  240
QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFVSA KHSNSHRKVL ELRRQKEFQR  300
HPAHHHQHQL ISQTSIFGVS NGGDDFLLHH HQNCGPNFRH LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802675.10.0PREDICTED: GATA transcription factor 12
RefseqXP_016434357.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S3X3830.0A0A1S3X383_TOBAC; GATA transcription factor
TrEMBLA0A1U7YV770.0A0A1U7YV77_NICSY; GATA transcription factor
STRINGXP_009802675.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-72GATA transcription factor 12