PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802629.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 332aa    MW: 36767.7 Da    PI: 7.9557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.4e-10245288755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  XP_009802629.1 245 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 288
                     5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11240295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-11240292No hitNo description
SuperFamilySSF474592.09E-13241298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-12244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7246288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSMAALAKEH IMNDTKMGLV DNYEYYEGEF GMNDHSSPEL YHGINEEPPK SVFENPEKTS  60
PNIAKNFAIS SSSSLSSPSS SNSNGHSVIS FKGGYGGNFM HSANGSLLSF EQSERFCPNP  120
RMSSNKVECS VWEDNNLQYN NSSNNYNQNS LTSKGSSNTS PRVLINENSK NIQRANSYGN  180
SNAIPFGWLN SEANATVEDL EREESRFNKR PCMEESMQTN KKQCTGGSKK AKSNTSVVTK  240
DPQSIAAKNR RERISERLKI LQELVPNGSK VDLVTMLEKA ISYVKFLQVQ VKVLATDEFW  300
PTQGGKAPDI SQVKNAIDAI LATQRDRNSS SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754417e-41HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802629.10.0PREDICTED: transcription factor bHLH83-like
RefseqXP_016499664.10.0PREDICTED: transcription factor bHLH83-like
TrEMBLA0A1S4CFC00.0A0A1S4CFC0_TOBAC; transcription factor bHLH83-like
TrEMBLA0A1U7YTU40.0A0A1U7YTU4_NICSY; transcription factor bHLH83-like
STRINGXP_009802629.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-59ROOT HAIR DEFECTIVE6