PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009802441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 83aa MW: 10187.7 Da PI: 10.0795 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.4e-18 | 3 | 55 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++f++eq++ Le+ Fe ++++++e++ +LA++lg + qV vWFqNrRa++k+ XP_009802441.1 3 RKFSEEQVNLLEQNFEDEHKLKTERKNKLASELGRDPHQVAVWFQNRRARYKN 55 69*************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 104 | 1.2e-33 | 2 | 80 | 3 | 81 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 kr++s+eqv+lLE++Fe e+kL++erK++la+eLg +p+qvavWFqnrRAR+k+k+lE++y++Lk++yd+ e++rLe XP_009802441.1 2 KRKFSEEQVNLLEQNFEDEHKLKTERKNKLASELGRDPHQVAVWFQNRRARYKNKKLEQEYSKLKTKYDTAIVEKCRLE 80 9**************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.8E-11 | 1 | 60 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.649 | 1 | 56 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.94E-17 | 2 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.88E-11 | 2 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-19 | 3 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-15 | 3 | 55 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.8E-5 | 27 | 36 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 4.8E-5 | 36 | 52 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 83 aa Download sequence Send to blast |
MKRKFSEEQV NLLEQNFEDE HKLKTERKNK LASELGRDPH QVAVWFQNRR ARYKNKKLEQ 60 EYSKLKTKYD TAIVEKCRLE YLI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802441.1 | 1e-54 | PREDICTED: homeobox-leucine zipper protein ATHB-21-like | ||||
Swissprot | Q9ZU70 | 1e-34 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A1U7YKD0 | 3e-53 | A0A1U7YKD0_NICSY; homeobox-leucine zipper protein ATHB-21-like | ||||
STRING | XP_009802441.1 | 5e-54 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18550.1 | 4e-37 | homeobox protein 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|