PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802421.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 277aa    MW: 31893.8 Da    PI: 9.8064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll +++++ G g+W++ +   g+ R++k+c++rw +yl
   XP_009802421.1 14 KGAWTAEEDMLLTNYIQLNGEGNWRSLPMNAGLLRCGKSCRLRWVNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.11.5e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEd+l+++++ +lGg+ W++Ia +++ gRt++++k++w++ 
   XP_009802421.1  67 RGNFSREEDDLIIRLHLLLGGR-WSLIAGRLQ-GRTDNEIKNHWNTN 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.537961IPR017930Myb domain
SuperFamilySSF466892.24E-2811108IPR009057Homeodomain-like
SMARTSM007179.7E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-211568IPR009057Homeodomain-like
CDDcd001671.25E-71661No hitNo description
PROSITE profilePS5129425.13562116IPR017930Myb domain
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001675.51E-969112No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2469117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRAPCCSKV GMRKGAWTAE EDMLLTNYIQ LNGEGNWRSL PMNAGLLRCG KSCRLRWVNY  60
LRPGIKRGNF SREEDDLIIR LHLLLGGRWS LIAGRLQGRT DNEIKNHWNT NLLKKLKAAG  120
IQPKPKKLTA KGTKPSKKKQ EKRRRAGKAK KPEREMEKDE LVKKIQVHIP KPIRLYSLSS  180
SQSSFQDKAE HNIITKLSSE EVDNKNKEEE KIQEPSISSS LSSSVQVEEK ETEIYEKIQL  240
FDELLNGCDF STECLEPTSC CYMLKEVYKE YFQLLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802421.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U7YKB00.0A0A1U7YKB0_NICSY; transcription repressor MYB6-like
STRINGXP_009802421.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1824834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.18e-51myb domain protein 41