PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802378.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 338aa    MW: 37317.8 Da    PI: 6.5027
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.9e-19232265134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C  tkTp+WR gp g+ktLCnaCG++y+k +
  XP_009802378.1 232 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 265
                     ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-692315IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.635226262IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-17226276IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-15230289No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15230264IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.54E-14231278No hitNo description
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
PfamPF003201.6E-16232266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGSSLVDEID CASFFDHMDD LIEFSPENEC GDLDSTDCKN FPSICNEPLP DSDPLFFSSH  60
RNSPSDFSSE LLVPYEDIVQ LEWLSTFVED SFSCGGLTMG KEHFPVNKEP SHNKFLSSSP  120
VSVLESSSSS SSSSGAVKTT PPLSPCHRGT QRARSKRPRP ATFNPRLVSQ LMSPTSSFTE  180
IHQQFVAPED TLESDFGESP MKKKKRIKFS IPLAPVDTNR NYQRAPQTVR KCVHCEITKT  240
PQWRAGPMGP KTLCNACGVR YKKGRLFPEY RPAAAPTFVP SLHSNSHKKV LEMRSNVFPE  300
DTHDKQAAPC SIRPLSPGPP ESNATAGTSI AQSDFNPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802378.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_009802379.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016473478.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016473479.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S4AA630.0A0A1S4AA63_TOBAC; GATA transcription factor
TrEMBLA0A1U7YT310.0A0A1U7YT31_NICSY; GATA transcription factor
STRINGXP_009802378.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-42GATA transcription factor 9