PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25997.8 Da PI: 9.734 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.9e-26 | 15 | 65 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCda++ +i+fs tgkl+eyss XP_009802201.1 15 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFEYSS 65 68***********************************************96 PP | |||||||
2 | K-box | 49.6 | 1.7e-17 | 89 | 179 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 l++ + +s ++++ L +e + re+R+l Ge+L+ L l+eL++Le+ +e +++++ + K e ++++i+ l+kke +lqeen +L+k+ e XP_009802201.1 89 LQSFNLQSEKKNYGILSREFAEKNRELRQLNGEELQGLGLEELMKLEKIVEGGISRVMKIKGEKFMREISSLKKKEAQLQEENSQLKKQSE 179 677788999999999999999999***************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.777 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-39 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 9 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.71E-37 | 9 | 84 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-29 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-14 | 94 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.533 | 94 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MIREVKMVRQ KIQIKKIDNL TARQVTFSKR RRGLFKKAQE LSTLCDADIG LIVFSATGKL 60 FEYSSSSMMQ LIDKHKVHSD RDMDSPDQLQ SFNLQSEKKN YGILSREFAE KNRELRQLNG 120 EELQGLGLEE LMKLEKIVEG GISRVMKIKG EKFMREISSL KKKEAQLQEE NSQLKKQSEA 180 RLNEVEGHNA IEGGHSADSI TTNRSLVNGH LDYIDSVTSL KLGLPIPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-18 | 7 | 80 | 1 | 74 | MEF2C |
5f28_B | 6e-18 | 7 | 80 | 1 | 74 | MEF2C |
5f28_C | 6e-18 | 7 | 80 | 1 | 74 | MEF2C |
5f28_D | 6e-18 | 7 | 80 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY643727 | 0.0 | AY643727.1 Physalis pubescens MPF1 (MPF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802201.1 | 1e-165 | PREDICTED: MADS-box protein SVP-like isoform X2 | ||||
Swissprot | Q9FVC1 | 3e-64 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A1U7YJN8 | 1e-164 | A0A1U7YJN8_NICSY; MADS-box protein SVP-like isoform X2 | ||||
STRING | XP_009802200.1 | 1e-163 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-53 | MIKC_MADS family protein |