PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009801951.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 14869.8 Da PI: 8.4826 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.4 | 2e-16 | 49 | 121 | 14 | 88 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++ ++p +fa ++g+ + ++ l+++de+ rsW+++l + ++++++l++ W+eF an+Lk+gD ++Fk++ + + XP_009801951.1 49 CQTRIPTQFALANGLTN-KNCGLIIRDEKQRSWNLRL--TTYGSQVYLGGRWREFHAANDLKVGDHMIFKVVTDgE 121 7789*********7664.44579**************..*******************************764422 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-16 | 37 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-15 | 40 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.5E-6 | 40 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-13 | 49 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.23E-15 | 52 | 129 | No hit | No description |
PROSITE profile | PS50863 | 11.152 | 53 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MDLLIINNIT DKAKPCILSS SQDFPNAEAA SHSPFSQSQF VYTAKPYACQ TRIPTQFALA 60 NGLTNKNCGL IIRDEKQRSW NLRLTTYGSQ VYLGGRWREF HAANDLKVGD HMIFKVVTDG 120 ENQSGNFVVN SLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801951.1 | 1e-97 | PREDICTED: uncharacterized protein LOC104247595 | ||||
TrEMBL | A0A1U7YJ28 | 3e-96 | A0A1U7YJ28_NICSY; uncharacterized protein LOC104247595 | ||||
STRING | XP_009801951.1 | 6e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00260.1 | 2e-10 | B3 family protein |