PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801904.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 287aa    MW: 32752.4 Da    PI: 8.0868
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-14881601799
                     E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +p+ f+ ++ +g   e+++  +  + +++W+vk+  ++++    l++GW++F+++++L+ gD +vF+++g++ef   v++f++
  XP_009801904.1  88 KIPRGFL-KYlKGH--EDIEHAVLRRVSKQWQVKV--NGRR----LEDGWEKFAEEHDLQLGDLLVFRHEGNMEF--EVSIFDS 160
                     5999999.554655..6778999999*********..8888....*************************99999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-181838IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-1277161IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-1788163IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1888163IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-1389159No hitNo description
PfamPF023621.0E-1089160IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98489161IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-6215273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-7216273IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSNTTKRKKK NIFSTAMKIP PKKPHFFKPI LPGFKHGLTR GVALMVSTLH FQPKGCEFES  60
PQEQGEGLLG GKYAEGLSKT ASLPRVGKIP RGFLKYLKGH EDIEHAVLRR VSKQWQVKVN  120
GRRLEDGWEK FAEEHDLQLG DLLVFRHEGN MEFEVSIFDS SHCDREYSEY LQQEEEEEEA  180
NNVEETSKNL EFEERPSPSI ELSDHAEAAT HKPFGHSSFV CTIKPYCLTY GFLYVPKHFA  240
SANGFKTNKK CSLIIKDERQ NSWTLRLSCC KKSTLEMAVV NSLLIIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0665912e-44AB066591.1 Nicotiana tabacum NtGA2 gene for heterotrimeric GTP binding protein alpha subunit, complete cds.
GenBankAB0665942e-44AB066594.1 Nicotiana tomentosiformis NtGA2t gene for heterotrimeric GTP binding protein alpha subunit, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801904.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1U7YRQ60.0A0A1U7YRQ6_NICSY; B3 domain-containing protein REM10-like isoform X1
STRINGXP_009801904.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-20B3 family protein