PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801586.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 361aa    MW: 40520.1 Da    PI: 5.0495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.3e-29145206159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg+nWrKYGqK++ g+++pr+YYrCt +   gC ++k+v+r++edp+++e+tY+g+H+++
  XP_009801586.1 145 LDDGFNWRKYGQKDILGAKYPRGYYRCTLRhvqGCLATKQVQRADEDPTIFEVTYRGRHTCN 206
                     59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.02140203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-28142206IPR003657WRKY domain
SuperFamilySSF1182909.81E-26144207IPR003657WRKY domain
SMARTSM007747.1E-41145207IPR003657WRKY domain
PfamPF031061.3E-26146205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MENYGADNNG ELNRIISELT QGKDLVHQLQ LQLNAPYSSS SSSPETTRDF LLHNIQSKFD  60
KALSLLQYST GDTSNSLLPH SNSVPIPYFG RSESPPSFTA SPPHSEDSDR DLEPKDPATR  120
KRKSNTPRWT KQVQICPGVP VEGTLDDGFN WRKYGQKDIL GAKYPRGYYR CTLRHVQGCL  180
ATKQVQRADE DPTIFEVTYR GRHTCNQGGG NANNNVMNPE PLTIIPQNQE QNLGAGSRNE  240
HQQIVSEPQQ NPQEILLNFQ RNLNISNDNN FNFNTDPNNV PFSTFASSSD IKSDQDYSFV  300
PNSIIQSNNF VESFSPSYNF GMSSNSEMNN FGGKQNGSND YQFNSMGYES NFPFDYQGFS  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18145205868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123TRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4600841e-175DQ460084.1 Nicotiana tabacum cDNA-AFLP fragment HN_BC2M14-487 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801586.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U7YI220.0A0A1U7YI22_NICSY; probable WRKY transcription factor 41
STRINGXP_009801586.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-46WRKY family protein