PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009800804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 644aa MW: 72603.9 Da PI: 6.6761 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.2e-09 | 397 | 434 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + XP_009800804.1 397 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 434 554459******************************88 PP | |||||||
2 | BELL | 113.9 | 8.7e-37 | 260 | 328 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+k+kLl++leeVd+rYk+y++q+++v+s Feavag g+a++Y +lA+ka+SrhFrcL+d i++qi XP_009800804.1 260 ELQKRKSKLLQMLEEVDRRYKHYCDQMKAVVSTFEAVAGNGAARVYSTLASKAMSRHFRCLRDGIVGQI 328 89*****************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.0E-57 | 195 | 326 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-45 | 201 | 324 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.082 | 375 | 438 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-9 | 378 | 442 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.87E-11 | 378 | 439 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 379 | 444 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 381 | 444 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.6E-18 | 395 | 434 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MLYVMMAGQE SEEIKPRSMV TTTGYWYSDH TSTPSNNIPN LVNHQLQSFE TNPEIYNLTS 60 GMEMIGFPSN NPQVMWKGNF FNKNSSNTIV GPSSSSSKST NELFYQHGNF TTSENMLVSP 120 TEDQGWNENN RLLVDDPSLR CVFPCEGNER PSQGLSLSLC SSNPSSIGLQ SFELRHQQQQ 180 IIQDGFLGKA AANIQGYYHQ IKDSKYLGPA QELLIEFCSL GTKQNDHSTK VLKQQKSNQW 240 EDENASSSKK QTLHSLDLLE LQKRKSKLLQ MLEEVDRRYK HYCDQMKAVV STFEAVAGNG 300 AARVYSTLAS KAMSRHFRCL RDGIVGQIKA TKKAMGEKDS VIVPGTTRGE TPRLRLLDQT 360 LRQQKAFQQM NMMETHPWRP QRGLPERSVS VLRAWLFEHF LHPYPSDVDK HILARQTGLS 420 RSQVSNWFIN ARVRLWKPMV EEMYLEETKD QQENLESPDG SKGLDHDMNG ISVGRQINQN 480 PQLHIEDQKP NLIRIDSECI SSIINHPEKN DTTNNNNKNC LQDHHQAHNF HSFGRGGDHS 540 FGAIELDFSS YNHNSTGAIA YGNENVQHNV GGGVSLTLGL NQNGGSGMGL STFSQASQSS 600 LFYPRDDHID QDCQQVPYSL LDSENQNLPY RNLMGAQLLH DLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 384 | 442 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 384 | 442 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-15 | 384 | 442 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-15 | 384 | 442 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF406700 | 0.0 | AF406700.1 Solanum tuberosum BEL1-related homeotic protein 14 (Bel14) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800804.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_009800805.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_009800806.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-140 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1U7YFS6 | 0.0 | A0A1U7YFS6_NICSY; homeobox protein BEL1 homolog | ||||
STRING | XP_009800804.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5300 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-127 | TALE family protein |
Publications ? help Back to Top | |||
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