PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009799485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 740aa MW: 80411.7 Da PI: 7.8359 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 6.8e-24 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++ XP_009799485.1 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFL--RTA 247 99****************************9743..345679************************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++v+r+ XP_009799485.1 248 DGELRLGVRRA 258 9999**99986 PP | |||||||
2 | Auxin_resp | 114.6 | 9.2e-38 | 283 | 364 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+++YnPras+s F+ +++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L XP_009799485.1 283 VVKAISSTNAFSICYNPRASSSGFILPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 364 6799*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-39 | 151 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-42 | 151 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-21 | 155 | 257 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-21 | 157 | 258 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-22 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-32 | 284 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MMCGLIDLNT VDNDDVGEET TAPVSPASSS TASGCSDLTS SSLPAMASVC LELWHACAGP 60 LISLPKKGSA VVYLPQGHLE HLSEYPPIAY NLPPHVFCRV VDVKLQADAA SDEVYAQVSL 120 VPDNQQIEQK WRDGDIDADT EEEEIEGAGK STTPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYRQ QRPSQELVAK DLHGIEWKFR HIYRGQPRRH LLTTGWSAFV NRKKLVSGDA 240 VLFLRTADGE LRLGVRRAAQ AKTCSNYLAA YSQLLNVSGI VDVVKAISST NAFSICYNPR 300 ASSSGFILPY HKFSKTLAHP FSAGMRFKMR VETEDAAEQR FTGLVVGVSD VDPVRWPGSK 360 WRCLLVRWDD LDVSRHNRVS PWEIEPSGSA PVSSSLVMPS AKRTRVGFPI TKADFPIPRD 420 GIAVSDFGES SRFQKVLQGQ EILGISSPFV GFDAHSPRTA GIRCFPGFPS SGASRLGNSI 480 RTLLGDTDKS PESIGFSDSS RYNKVLQGQE TFSTPPYGRG HAGSLMQEKS RTGIIVGIQV 540 PSHVNRWSAP NQGNRSHCNP STLVPASSPP SVLSFQPPRS PASKFQAMFN HKHGKLETAT 600 QALDMSESCS RHLASGSHAE DISRKGDTKG ISSFSFLKEQ KQTGISYLSL GTQSSQNLVS 660 MCKTSCRIFG FPLTESKINA ARAENPAEAV YSHGLETTFL PSSDGKLQPG PPLMTNVVGT 720 NFTKVNDLYA ARDVILDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-109 | 48 | 389 | 18 | 357 | Auxin response factor 1 |
4ldy_B | 1e-109 | 48 | 389 | 18 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340254 | 0.0 | DQ340254.1 Lycopersicon esculentum auxin response factor 3 (ARF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799485.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1U7YKY5 | 0.0 | A0A1U7YKY5_NICSY; Auxin response factor | ||||
STRING | XP_009799485.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |