PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799344.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 487aa    MW: 53393.9 Da    PI: 6.7256
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-10199240546
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  XP_009799344.1 199 KTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQELK 240
                     788*************************99888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-8191242No hitNo description
SMARTSM003382.5E-7195260IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438197241IPR004827Basic-leucine zipper domain
CDDcd147086.72E-22199250No hitNo description
SuperFamilySSF579591.56E-6199242No hitNo description
PfamPF001707.7E-7199240IPR004827Basic-leucine zipper domain
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
PfamPF141441.4E-30284357IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MQAFKAAVLP AVTLNNNNNS NMYCHSSFYL RGDEASRHAA ARFADIGELE QSTGFPQEDA  60
VDLSRSSVYG EMRPNNVAVV SSNNNLHFGE LNTSIGSTEM GSSETGGVEA GGRFMLHKAQ  120
TTMVGGGGVV GGGAVTLGNG HFENWADSGI ADHSHSQQTD TSTDVDTDER NHQGQGVQHG  180
ALMAVDSIDQ SKVKHGDQKT LRRLAQNREA ARKSRLRKKA YVQQLETSRL KLSQLEQELK  240
RARQQGMFIA NGYAGDQSLS GGGNGALAFD MDYARWLEDH QRLISDLRSA VNSHRGDNEL  300
RLLVDGVMLH YDEIFKLKSV GAKSDVFHML SGMWKTPAER CFMWLGGFRS SELLKILGNH  360
LEPLTEQQLM GICNLQQSSQ QAEDALSQGM EALQQSLVDT LSSTSLGPTG SGNVADYMGQ  420
MAIAMGKLAT LENFLYQADL LRQQTLQQLH RILTTRQAAR ALLVISDYMS RLRALSSLWL  480
ARPKDQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-95HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799344.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X3
RefseqXP_016450867.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ415581e-178HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1S3YG110.0A0A1S3YG11_TOBAC; transcription factor HBP-1b(C38)-like isoform X1
TrEMBLA0A1U7YJD40.0A0A1U7YJD4_NICSY; transcription factor HBP-1b(C38)-like isoform X3
STRINGXP_009799342.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-136bZIP family protein