PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799343.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 505aa    MW: 55509.4 Da    PI: 7.1091
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-10217258546
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  XP_009799343.1 217 KTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQELK 258
                     788*************************99888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-8209260No hitNo description
SMARTSM003382.5E-7213278IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438215259IPR004827Basic-leucine zipper domain
PfamPF001708.0E-7217258IPR004827Basic-leucine zipper domain
CDDcd147082.52E-21217268No hitNo description
SuperFamilySSF579591.63E-6217260No hitNo description
PROSITE patternPS000360220235IPR004827Basic-leucine zipper domain
PfamPF141441.5E-30302375IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MQAFKAAVLP AVTLNNNNNS NMYCHSSFYL RGDEASRHAA ARFADIGELE QSTGFPQEDA  60
VDLSRIYGEM RPNNVAVVSS NNNLHFGELN TSIGSTEMGS SETGGVEAGG RFMLHKAQTT  120
MVGGGGVVGG GAVTLGNGHF ENWADSGIAD HSHSQQTDTS TDVDTDERNH QEIMSSSRGK  180
SLRNSLLQQC RGQGVQHGAL MAVDSIDQSK VKHGDQKTLR RLAQNREAAR KSRLRKKAYV  240
QQLETSRLKL SQLEQELKRA RQQGMFIANG YAGDQSLSGG GNGALAFDMD YARWLEDHQR  300
LISDLRSAVN SHRGDNELRL LVDGVMLHYD EIFKLKSVGA KSDVFHMLSG MWKTPAERCF  360
MWLGGFRSSE LLKILGNHLE PLTEQQLMGI CNLQQSSQQA EDALSQGMEA LQQSLVDTLS  420
STSLGPTGSG NVADYMGQMA IAMGKLATLE NFLYQADLLR QQTLQQLHRI LTTRQAARAL  480
LVISDYMSRL RALSSLWLAR PKDQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-95HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799343.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
SwissprotQ415581e-173HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1U7Y8A10.0A0A1U7Y8A1_NICSY; transcription factor HBP-1b(C38)-like isoform X2
STRINGXP_009799342.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-135bZIP family protein