PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799173.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 269aa MW: 30645.7 Da PI: 8.227

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.2	1e-29	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt++LH+ F +av+qLGG+e+AtPk il++m+++gLt+ hvkSHLQkYR+ XP_009799173.1 23 KERLKWTQQLHDLFEKAVTQLGGPERATPKGILKVMGIEGLTIFHVKSHLQKYRM 77 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-27	21	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-16	21	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-15	109	153	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MPGKFKELLS SNMGSNRSDC SSKERLKWTQ QLHDLFEKAV TQLGGPERAT PKGILKVMGI 60 EGLTIFHVKS HLQKYRMSKF VREDPVIGKF ERRSISEILP NFSATAGAQL NEALQMHMDA 120 RRRLSDHLEV QRNLRMKLEA QGRFLDGIME ERKAHASSCR LSCKSYSYSP LSLPSLCDEL 180 SESNVKELES DSEVDRNEIR SVDPECQARK RSRIDEDVIL SHRYNSNVAY SSLTSGPQNH 240 PYSSPHELPW STLATYQSPH MPAFYDSLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-21	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-21	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-21	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-21	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	23	80	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799173.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
TrEMBL	A0A1U7Y7T1	0.0	A0A1U7Y7T1_NICSY; protein PHR1-LIKE 1-like
STRING	XP_009799173.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-47	G2-like family protein