PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798759.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18598.1 Da    PI: 9.4594
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.13.5e-161561147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ie++  r+ tfskRr g+ KKA+EL  LC +++ +++fs+tgk +
  XP_009798759.1 15 KKIESEDDRYATFSKRRLGLYKKASELVKLCHVDIGIVLFSPTGKPF 61
                    68******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-21766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.077767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-23878IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-15929IPR002100Transcription factor, MADS-box
PfamPF003194.4E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGKKTRGRQ KIPMKKIESE DDRYATFSKR RLGLYKKASE LVKLCHVDIG IVLFSPTGKP  60
FSFFHPTPEA IIDRFFNPNT QLSESTRLVA ANARNKVNQL NNKREVFDNI KEITSAHALL  120
LDKMKESGQE YWWESIEQFN ADEVVNASVE GDNPPARIQA RE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798759.11e-119PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U7YHN61e-117A0A1U7YHN6_NICSY; agamous-like MADS-box protein AGL61
STRINGXP_009798759.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-28AGAMOUS-like 61