PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009798278.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 190aa MW: 21198 Da PI: 9.5965

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009798278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	224.7	2.6e-69	9	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 sse+vCyv+CnfCntilavsvP + +f +vtvrCGhC++llsv+++ + q l+ ++ +++++++++ + s+ ++s+s+ ++ + XP_009798278.1 9 ISSERVCYVHCNFCNTILAVSVPCSNIFAIVTVRCGHCSNLLSVSMQSSLQPLPLQDP--------QKQQRQQSNVENGSKACGSSSSSKFNRFS 95 689****************************************9999999999985........33333333333334444444444444444 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + ++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishr+afs+aaknWahfP+ihfgl XP_009798278.1 96 AIDY-SPQNEPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHRQAFSTAAKNWAHFPHIHFGL 164 4444.4556688888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-72	10	164	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-8	102	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	113	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLDMTSSIS SERVCYVHCN FCNTILAVSV PCSNIFAIVT VRCGHCSNLL SVSMQSSLQP 60 LPLQDPQKQQ RQQSNVENGS KACGSSSSSK FNRFSAIDYS PQNEPRITPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHRQAFSTA AKNWAHFPHI HFGLKLESNK QAKLDHAVAG 180 ESPHKSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ767669	0.0	KJ767669.1 Nicotiana tabacum FAS protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798278.1	1e-140	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016503299.1	1e-140	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q9XFB0	1e-73	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A076FU30	1e-138	A0A076FU30_TOBAC; FAS protein
TrEMBL	A0A1U7Y567	1e-138	A0A1U7Y567_NICSY; axial regulator YABBY 5-like
STRING	XP_009798278.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-64	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]