PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009798274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 438aa MW: 49671.1 Da PI: 5.9913 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 239 | 2e-73 | 68 | 435 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fse..vsPi 90 elL + A+ v+++++ +a+++L+ + as +g+p+qR++ yf+ AL++r+ r+ ++ + ++ ++ +n +eel ++ l f + ++P+ XP_009798274.1 68 AELLQASAQLVATRKFDRATKFLSLCDQSASAAGTPVQRVVYYFADALQHRIDREIGKMPITREADIEAYSNDVEELVMD-LepavFAKrpLFPY 161 5789999***********************************************55544433333333333333333332.23466654449*** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA.eelgvpfefnvlva 183 +++ +t qaIl+++++++rvH iD+ i+ G +W +++q+La+R+e p +l+i vg+ sk+++e +g+rL+ fA e+l+++f+f++ v+ XP_009798274.1 162 RQVTSFTGIQAILDSTKTAKRVHLIDLCIKSGSHWTTFMQTLADRDECPLkHLKISSVGR----SKKKMEDVGRRLSAFAaETLNISFSFKT-VV 251 **********************************************65544*********....9**************73679********.79 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++l +l+ e+++v+ +E++aV + + l ++l+ + +++s +++++ksl+P ++v+ve a++ ++F + f e+l+y+sal d+ e+ XP_009798274.1 252 SDLRNLKSESFEVEADEVVAVYSDVILWTMLAWPNDMDS----LMEVIKSLNPCIIVLVEGIANTYLPDFIDSFNETLYYFSALTDCSEVL---- 338 99****************************966666666....**********************************************99.... PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSa 372 ++ +E +++++ i+n+++ g+e + rh +l+ Wr+ + ++G+ + ls+ +a+ll k +++g + e ++++lv+ Wk+ p++ vSa XP_009798274.1 339 HKGVPIYEGFYIQKVIRNMITYHGEENVPRHGNLKVWRDLFAKFGMVETDLSHLSLIEASLLFDKSEFRGlCTCELDEKCLVIRWKKTPMICVSA 433 89999**************************************************************999789999******************* PP GRAS 373 Wr 374 W+ XP_009798274.1 434 WK 435 *8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.872 | 41 | 414 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-71 | 68 | 435 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 438 aa Download sequence Send to blast |
MEAKKRGDHA EEKQESVVLS SAPTIMKIAR QRLLNHIAQK SDAYSIIFNP PTANSGLSPE 60 LEQDLDLAEL LQASAQLVAT RKFDRATKFL SLCDQSASAA GTPVQRVVYY FADALQHRID 120 REIGKMPITR EADIEAYSND VEELVMDLEP AVFAKRPLFP YRQVTSFTGI QAILDSTKTA 180 KRVHLIDLCI KSGSHWTTFM QTLADRDECP LKHLKISSVG RSKKKMEDVG RRLSAFAAET 240 LNISFSFKTV VSDLRNLKSE SFEVEADEVV AVYSDVILWT MLAWPNDMDS LMEVIKSLNP 300 CIIVLVEGIA NTYLPDFIDS FNETLYYFSA LTDCSEVLHK GVPIYEGFYI QKVIRNMITY 360 HGEENVPRHG NLKVWRDLFA KFGMVETDLS HLSLIEASLL FDKSEFRGLC TCELDEKCLV 420 IRWKKTPMIC VSAWKFQH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-29 | 96 | 435 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798274.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016450439.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S3YE77 | 0.0 | A0A1S3YE77_TOBAC; DELLA protein RGL1-like | ||||
TrEMBL | A0A1U7YGB0 | 0.0 | A0A1U7YGB0_NICSY; DELLA protein RGL1-like | ||||
STRING | XP_009798274.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66350.1 | 4e-43 | RGA-like 1 |