PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009797733.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 20975.3 Da PI: 9.8495

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009797733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.2	3.2e-11	17	57	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ++k+ +v +s+ ++ + K A LS+LC++++a+iifs t XP_009797733.1 17 FKDKRAEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSIT 57 6789999*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0016	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.834	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-14	9	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-6	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.9E-10	18	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-6	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-6	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MARMTSQMKS KSEKKKFKDK RAEKVALSNK QKALSKRAMD LSTLCGIDIA IIIFSITAEP 60 FLFGNPNVES VVERFSQAKL PFYLMSSRKT THENTRDGEE NNTMKKKKKK AINEEEKGAT 120 LEIFEPTNLE RLENLNQEID ELEKDLTEKI DELQSKIVVK DPKFVLEMNA TKSSAMPSKW 180 LNL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787652.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_009788111.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_009797733.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1U7X6C1	1e-128	A0A1U7X6C1_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009787652.1	1e-129	(Nicotiana sylvestris)
STRING	XP_009788111.1	1e-129	(Nicotiana sylvestris)
STRING	XP_009797733.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-07	AGAMOUS-like 61