PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009797256.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 273aa MW: 29864.3 Da PI: 6.1004 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.9 | 5.7e-10 | 87 | 135 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e kr +r NReA r++R++Kka+ + Le++v L a N++L k+l+ XP_009797256.1 87 EGKRKKRPLGNREAVRKYREKKKARAASLEDEVVRLRAINQQLMKRLQG 135 569******************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.6E-14 | 82 | 153 | No hit | No description |
SMART | SM00338 | 4.2E-10 | 84 | 152 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.347 | 87 | 134 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.38E-7 | 89 | 134 | No hit | No description |
Pfam | PF07716 | 2.4E-12 | 89 | 134 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 2.77E-12 | 90 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDDGELEFSN QEMLSSSNFG EFPDSGSMDS FFNEILKDTH ACTHTHTCNP PGPDNTHTHT 60 CYHVHTKIVP PLSEDKTASD DTAESAEGKR KKRPLGNREA VRKYREKKKA RAASLEDEVV 120 RLRAINQQLM KRLQGQAVLE SEIARLKCLL VDIRGRIEGE IGSFPYQKPM KSGDVYQNLV 180 NPNLPGAYVM NPCNLQCDDR VYCLHPGSEG KSLDDTALDG QGFDNCEFET LQCLGNQTSE 240 LKEGSGCALG NGAPTGNPSG GSKRKGTRAA IAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ719062 | 7e-59 | AJ719062.1 Nicotiana tabacum cDNA-AFLP-fragment MBT34-200, cultivar Bright Yellow 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797256.1 | 0.0 | PREDICTED: uncharacterized protein LOC104243716 | ||||
Refseq | XP_009797257.1 | 0.0 | PREDICTED: uncharacterized protein LOC104243716 | ||||
Refseq | XP_009797258.1 | 0.0 | PREDICTED: uncharacterized protein LOC104243716 | ||||
Refseq | XP_009797259.1 | 0.0 | PREDICTED: uncharacterized protein LOC104243716 | ||||
Refseq | XP_009797260.1 | 0.0 | PREDICTED: uncharacterized protein LOC104243716 | ||||
Refseq | XP_016502370.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_016502371.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_016502372.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_016502373.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_016502374.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Swissprot | Q8GTS2 | 1e-109 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A1S4CMT9 | 0.0 | A0A1S4CMT9_TOBAC; basic leucine zipper 23-like | ||||
TrEMBL | A0A1U7YEN7 | 0.0 | A0A1U7YEN7_NICSY; uncharacterized protein LOC104243716 | ||||
STRING | XP_009797256.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2989 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 7e-98 | bZIP family protein |
Publications ? help Back to Top | |||
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