PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009797138.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 262aa MW: 28517.4 Da PI: 5.0654

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009797138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.2	1.8e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_009797138.1 28 RSRWNPKPEQILILESIFNSgMVNPPKDETVRIRKILeqfgAVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.3	9.2e-35	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q XP_009797138.1 27 VRSRWNPKPEQILILESIFNSGMVNPPKDETVRIRKILEQFGAVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-8	5	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-13	21	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.143	24	89	IPR001356	Homeobox domain
SMART	SM00389	2.6E-6	26	93	IPR001356	Homeobox domain
Pfam	PF00046	3.8E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEDEAQDSTS SNQSNSTRSN SERNEPVRSR WNPKPEQILI LESIFNSGMV NPPKDETVRI 60 RKILEQFGAV GDANVFYWFQ NRRSRSRRRQ RQIQASLNAT NENSRSGGEQ AANCSSGCAI 120 QFGPSSISFP MAAPSNYLVL GSSSSSCGGD MGNNANDGTN GLFPFSGQMG LPEIEQNSSV 180 SSILCSPADN ANLHYQTGFI TVFINGVATE VPRGPLDMNS MFGQENLALY HSSGVPLPVN 240 EYGFVVQSLQ HGESYFLVSR PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-60	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-60	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797138.1	0.0	PREDICTED: WUSCHEL-related homeobox 11 isoform X2
Refseq	XP_016453095.1	0.0	PREDICTED: WUSCHEL-related homeobox 11 isoform X2
Swissprot	Q6X7J3	1e-73	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A1S3YMD6	0.0	A0A1S3YMD6_TOBAC; WUSCHEL-related homeobox 11 isoform X2
TrEMBL	A0A1U7Y1X7	0.0	A0A1U7Y1X7_NICSY; WUSCHEL-related homeobox 11 isoform X2
STRING	XP_009797137.1	1e-169	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-72	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]