PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797137.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 270aa    MW: 29262.3 Da    PI: 4.904
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.11.9e-152888257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+++++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  XP_009797137.1 28 RSRWNPKPEQILILESIFNSgMVNPPKDETVRIRKILeqfgAVGDANVFYWFQNRRSRSRR 88
                    89*****************99*************************************997 PP
2Wus_type_Homeobox107.29.8e-352790265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
     XP_009797137.1 27 VRSRWNPKPEQILILESIFNSGMVNPPKDETVRIRKILEQFGAVGDANVFYWFQNRRSRSRRRQ 90
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-8589IPR009057Homeodomain-like
SuperFamilySSF466891.28E-132195IPR009057Homeodomain-like
PROSITE profilePS5007111.1432489IPR001356Homeobox domain
SMARTSM003892.6E-62693IPR001356Homeobox domain
PfamPF000464.0E-132888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEDEAQDSTS SNQSNSTRSN SERNEPVRSR WNPKPEQILI LESIFNSGMV NPPKDETVRI  60
RKILEQFGAV GDANVFYWFQ NRRSRSRRRQ RQIQASLNAT NENSRSGGEQ AANCSSGCAI  120
QFGPSSISFP MAAPSNYLVL GSSSSSCGGD MGNNANDGTN GLFPFSGQMG LPEIEQNSSV  180
SSILCSPADN ANLHYQTGAE VVCVSGFITV FINGVATEVP RGPLDMNSMF GQENLALYHS  240
SGVPLPVNEY GFVVQSLQHG ESYFLVSRPA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-60HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-60HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797137.10.0PREDICTED: WUSCHEL-related homeobox 11 isoform X1
RefseqXP_016453094.10.0PREDICTED: WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J32e-71WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A1S3YLH60.0A0A1S3YLH6_TOBAC; WUSCHEL-related homeobox 11 isoform X1
TrEMBLA0A1U7XYU60.0A0A1U7XYU6_NICSY; WUSCHEL-related homeobox 11 isoform X1
STRINGXP_009797137.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61662231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-70WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]