PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 305aa MW: 33532.5 Da PI: 9.0351 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.1 | 6.5e-20 | 202 | 235 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++tkTp+WR+gp g+ktLCnaCG++yr+ + XP_009795846.1 202 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 235 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.477 | 196 | 232 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-14 | 196 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-14 | 201 | 233 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.27E-16 | 201 | 248 | No hit | No description |
SuperFamily | SSF57716 | 7.13E-15 | 201 | 259 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 202 | 227 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-17 | 202 | 235 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MMTMVGHCGY LDGIPTGPVV DEDFDDILNF LDFPLESLEE DGQGVEWDAS ESKFLGPIPM 60 DALMAFPPVP QGNIGNGRVK AEPNSNHPIK VTEGQGSGIF QTQSPVSVLE SSNSCSGGKS 120 ISIKHDIAIP VRPRSKRPRS SALNPWILMP PISSTRFASK KTCDARKGKE KKRKMSLLSV 180 PQIADVTKKK TTSAQQFSFK KCTHCQVTKT PQWREGPLGP KTLCNACGVR YRSGRLFPEY 240 RPAASPTFVP TLHSNSHRKV VEMRKKAIYG ETSALEEPHN VIVEGPPMSP APEFVPMSSY 300 LFDVY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X73111 | 0.0 | X73111.1 Nicotiana tabacum mRNA for GATA-1 zinc finger protein (Ntl1-Nt7 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795846.1 | 0.0 | PREDICTED: GATA transcription factor 11-like isoform X2 | ||||
TrEMBL | A0A1S4DMS0 | 0.0 | A0A1S4DMS0_TOBAC; GATA transcription factor 11-like isoform X2 | ||||
TrEMBL | A0A1U7Y1L4 | 0.0 | A0A1U7Y1L4_NICSY; GATA transcription factor 11-like isoform X2 | ||||
STRING | XP_009795845.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 2e-44 | GATA transcription factor 11 |