PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009795434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 705aa MW: 76352.9 Da PI: 6.5065 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.6e-09 | 276 | 296 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg XP_009795434.1 276 PCPDFRK-GTCQRGDACEYAHG 296 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 5.1E-17 | 53 | 173 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.64E-16 | 60 | 165 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.5E-9 | 66 | 144 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0059 | 75 | 105 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.096 | 75 | 158 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.47E-15 | 77 | 172 | No hit | No description |
SMART | SM00248 | 4.4E-4 | 110 | 142 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.915 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.6E-5 | 271 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 275 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 276 | 296 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 276 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 304 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 63 | 306 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.005 | 306 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MCSGSKSKVC SADLAMEAEI QKQKDLVPAF SLLLELSASD DIVNFQKAVE EEGHDMNEVG 60 LWYGRRIGVK KMGYEERTPL MIAATFGSKR VLNYMLEKGC LDVNQACGSD GATALHCAIA 120 GDSAALLEVV KLLLDASADV NLVDANGKRA VDLISAQGCC LNSRRKILEH LLGGSSDDGE 180 ASGLIDQIIS EQAEEQLLLT PNISKFGSEK KEYPVDPSLP DIKIGIYGTD DFRMYIFKVK 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGTCQRGDA CEYAHGIFEC 300 WLHPAQYRTR MCKDETNCNR RVCFFAHKPE ELRSLYPSTG SAVLSPRSYS NGPLSLDIAS 360 ISPLALGSPS IMMPPTSTPP MSPSAGASSV GGSLWPCQSS LATPTLQLPI SRLKTTYSAR 420 DVELDNGLLG FESHHLRQDQ LMDDLSALSS PSGWNSSSAK AAAFAASSSD RNGELGRHGG 480 LKPTNLDDIL ATLDSKILSQ LQGLSLDAGS TQLQSPKGMQ MRQNMNQQLM TGYSSGQSSP 540 SFRTSSSFGI DPSGAAAAAL SSRSAAFAKR SQSFIDRSAA GRLSGISSSL SNASAVPPNL 600 SGWGSPDGKL DWGIQKEELN KLRKSASFGL RSSGSRFPMS ESSILNSSAE RDVSWVQSMV 660 KDSPAMSSRQ LSREDQQYHL NASRGSETIP TWADQLYLEQ EQIVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795434.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
TrEMBL | A0A1U7Y856 | 0.0 | A0A1U7Y856_NICSY; zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
STRING | XP_009795434.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-156 | C3H family protein |