PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795383.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 594aa    MW: 62985.7 Da    PI: 9.2872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07204248144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
   XP_009795383.1 204 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 248
                      789************************984222488888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.723199256IPR017930Myb domain
SuperFamilySSF466893.09E-12200253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-13200253IPR009057Homeodomain-like
SMARTSM007172.8E-8203254IPR001005SANT/Myb domain
PfamPF002492.1E-6204248IPR001005SANT/Myb domain
CDDcd116603.26E-14205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEKRKLQKRV FIGEDDVSSL LQRYTTMTVL TLLQEVSQVQ DVKIDWNELV KKTTTGITNA  60
REYQMLWRHL AYHHGLLDKF DDDSAQPLDD DSDLEYELEA FPPVSSEASA EATAYVKVLI  120
ASGVPCDSHM SNGNTIEAPL TISIPNGQTS GTATENSLHG ISAYGMKITV PVSVEKQPLP  180
SVTAAEVVDT NGPANSNFPP RRRRKPWSAA EDMELIAAVQ KCGEGNWANI LKGDFKGDRT  240
ASQLSQRWAI IRKRHGNMAG NGSQLSEAQL AARHAVSLAL GDNLRAACPI STNVGPNSGS  300
APGNSSHFAA ANNASGGPKS EHQQDLVPSK PRVLPKNPLP KPAINPDSMV KTAAMAAGSR  360
IPTPSGAAAS LQKAAESKKV VQIMPGGTPA VKSSVPGSTN GLPSNVHFIR NGLVSRPPGC  420
SPSNASQSAV RPNPGAVPSR TNVSSGVPAA PTSSSARVLE AKTKAVAIQE NPTDILSNAR  480
IEKVEVDRAA SMDAQQQVRK GQTFGSSNLL TEKIEGQTSI FGRIVKEHGG ESKASRVRAQ  540
EKLIPSLETA SDNSIRNQGE NSNKNENTKI VLALESSGVQ GPATETCNKV FKGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205PRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795383.10.0PREDICTED: uncharacterized protein LOC104242090
RefseqXP_016460255.10.0PREDICTED: uncharacterized protein LOC107783722
TrEMBLA0A1S3Z7030.0A0A1S3Z703_TOBAC; uncharacterized protein LOC107783722
TrEMBLA0A1U7XWR60.0A0A1U7XWR6_NICSY; uncharacterized protein LOC104242090
STRINGXP_009795383.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-78MYB_related family protein