PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795232.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 349aa    MW: 39849.3 Da    PI: 8.8724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.3e-06189208120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_009795232.1 189 FACNICNKTFNRYNNMQMHM 208
                     78*****************9 PP
2zf-C2H216.62.2e-05273295123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk+F  k + ++H +++
  XP_009795232.1 273 FSCRKCGKTFAVKGDWRTHEKNC 295
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-5174212No hitNo description
PfamPF139123.7E-4189208IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783189216IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5189208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.095189211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SMARTSM00355190236268IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.44E-5259293No hitNo description
Gene3DG3DSA:3.30.160.603.8E-4260293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035532273293IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGIRNNYSHI VQDTDLCFQA PNFIEWLKPS SNSSSSSPSP SSSSSSSSTI TQSQLLIHHE  60
PTNPMTFLKL PLLYNPQEIQ DMNINQAIQC LPLLNKLTDP KTERKEQDIG ERKKECCEVK  120
EEKMERVTVS LHIGLPDSCD VEAKPPFSFK QEEENREKLS SKIKGCNFNS ESRFWIPTPA  180
QILVGPMQFA CNICNKTFNR YNNMQMHMWG HGSEYRKGPE SLRGTQPAAM LRLPCYCCAQ  240
GCKNNINHPR AKPLKDFRTL QTHYKRKHGT KAFSCRKCGK TFAVKGDWRT HEKNCGKLWY  300
CICGSDFKHK RSLKDHIRSF GKGHSPHPSL NNGNFNKECT SDDEVNLTN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795232.10.0PREDICTED: protein TRANSPARENT TESTA 1
RefseqXP_016484426.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-123ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S4B6C30.0A0A1S4B6C3_TOBAC; zinc finger protein WIP3-like
TrEMBLA0A1U7XT400.0A0A1U7XT40_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009795232.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-117WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]