PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794839.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 342aa    MW: 38441.9 Da    PI: 7.1779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12205230126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_009794839.1 205 YQPDICKDYKETGYCGYGDSCKFMHD 230
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9203235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878204232IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7204231IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12205235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.7E-14265323IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.53E-13281324No hitNo description
PfamPF139201.0E-8281323No hitNo description
CDDcd001629.50E-9282323No hitNo description
PROSITE profilePS5008910.571282320IPR001841Zinc finger, RING-type
SMARTSM001841.7E-4282319IPR001841Zinc finger, RING-type
PROSITE patternPS005180297306IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MENSNTPAFE SNPAEAETEQ PPTAPPSSSS VCNFFKKPSK GKNIRKRPTV EEGENDDAEG  60
EGSVIYTKKK PAIADNKLRF STGASKCNKA TESNVDSKSR VFHFESSKEI QVQNDSRATA  120
TLETETEFSK DARAIRERAL KQAEGALKGK SKTGGDEKLY KGMNQYTDYK AGLRREHTIS  180
SEKAGGAHGP LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQI  240
EKEWDEAEKE RKRKLAMGML DEDDEDAEKS DEDDDDALPF ACFICREPFV DPVMTKCKHY  300
FCEHCALKHH AKNKKCFVCN QPTLGIFNTA FEIRKRMAAQ GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-683133714317RING finger protein 113A
5z58_M3e-683133714317RING finger protein 113A
6ff4_t3e-683133714317RING finger protein 113A
6ff7_t3e-683133714317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794839.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_016511945.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-158C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S4DEQ90.0A0A1S4DEQ9_TOBAC; zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1U7Y6H20.0A0A1U7Y6H2_NICSY; zinc finger CCCH domain-containing protein 1
STRINGXP_009794839.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-155C3H family protein