PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009794538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 100aa MW: 12117.7 Da PI: 10.0687 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 40 | 93 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LAk++gL+ rqV +WFqNrRa++k XP_009794538.1 40 KKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVAIWFQNRRARYK 93 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 94.3 | 1.3e-30 | 39 | 100 | 1 | 62 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkd 62 ekkrrl +qv++LE+sFe e+kLeperK +la+e glqprqva+WFqnrRAR+k+kqlEkd XP_009794538.1 39 EKKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVAIWFQNRRARYKSKQLEKD 100 69**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-19 | 26 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 35 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 38 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.15E-13 | 40 | 96 | No hit | No description |
Pfam | PF00046 | 5.2E-16 | 40 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-19 | 47 | 94 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 66 | 75 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 70 | 93 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 75 | 91 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MVNFDDTRGT KTKERSFFPS LDKEENSNED YEVSFHQPEK KRRLLPKQVQ FLEKSFEVEN 60 KLEPERKIQL AKETGLQPRQ VAIWFQNRRA RYKSKQLEKD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 95 | RRARYKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794538.1 | 2e-67 | PREDICTED: homeobox-leucine zipper protein HAT5-like, partial | ||||
Swissprot | Q02283 | 2e-28 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1U7XUD0 | 5e-66 | A0A1U7XUD0_NICSY; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_009794538.1 | 9e-67 | (Nicotiana sylvestris) | ||||
STRING | XP_009801495.1 | 7e-65 | (Nicotiana sylvestris) | ||||
STRING | XP_009801498.1 | 3e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 9e-31 | homeobox 1 |
Publications ? help Back to Top | |||
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