PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009794398.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 210aa MW: 22316.3 Da PI: 10.2153

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009794398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.1	6.6e-34	52	120	5	73
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+pai+++tgt++ ++ ++ XP_009794398.1 52 TSSNRDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRHAEPAIIAATGTGTVPSGHV 120 67899********************************************************88877444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-29	54	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.514	55	109	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGSEFVLHHN FTPSTGAVAV AGSGGTNSVS NDKNALVVGP KKKHSLSTRI TTSSNRDRHT 60 KVNGRGRRVR MPALCAARVF QLTKELGHRT DGETIEWLLR HAEPAIIAAT GTGTVPSGHV 120 ITTAVSVPLS RSPPSVLAPV NRSQPVSGFP VSGGIFSMTS PPPSCRLDLY QPALEFSGNE 180 YRHMPFTALL LQPVTADDGE KKVAGEDDNK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794398.1	1e-153	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	2e-37	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1U7XTX0	1e-152	A0A1U7XTX0_NICSY; transcription factor TCP11
STRING	XP_009794398.1	1e-153	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	1e-39	TCP family protein