PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 402aa MW: 45796.9 Da PI: 5.7821 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103 | 4e-32 | 16 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 lppG+rF+Ptdeel yL+ k ++ ++ +i+e+diyk+ P++L ++k++e ++yfF++ +ky++gk+ +r ++g+Wka+ + XP_009793522.1 16 LPPGVRFKPTDEELN-VYLRIKSSNGEILP-GIINELDIYKYGPKELSgFAIKHSEGRMYFFTPLTNKYENGKKIQRkiYSDEGFWKASQARSDH 108 79************7.89**9999999766.79**************966888888899***************999433669************ PP NAM 93 lskkgelvglkktLvfy..kg.rapkgektdWvmheyrl 128 +k+g+ +g+k+ Lv+y kg +++kg+kt+W+m+e+rl XP_009793522.1 109 REKNGAIIGTKTNLVYYeyKGqKKSKGTKTSWLMQEFRL 147 **9**************664448999***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-33 | 14 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.845 | 16 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-16 | 17 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAMAITDNGY EWKKKLPPGV RFKPTDEELN VYLRIKSSNG EILPGIINEL DIYKYGPKEL 60 SGFAIKHSEG RMYFFTPLTN KYENGKKIQR KIYSDEGFWK ASQARSDHRE KNGAIIGTKT 120 NLVYYEYKGQ KKSKGTKTSW LMQEFRLPEN HHPRPLFNGT MNELIICVIY DNGRVKDDDQ 180 VVILTQCNHH IPPQTPNPNL PFNQNFDQSP YTFPIHHNPN DISHHDNSSQ ETPNSYSDFV 240 TNHVPLQQYQ PQITSDVIAV GKGWPIEQSS PKNNTEIANI STMYQDLPPL PYYDTMENLS 300 TFSSISQNSY LDGFDPSIYL NFDNINAYMG DEIGSDISND IADFGPWPSS SYSTMLFTGS 360 CSYSSDADQN KLETNDTPIS QGNQNSSSDS QDKQLKMKKI KI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-19 | 16 | 170 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-19 | 16 | 170 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-19 | 16 | 170 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-19 | 16 | 170 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 9e-20 | 16 | 170 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 1e-19 | 16 | 170 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-19 | 16 | 170 | 17 | 163 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793522.1 | 0.0 | PREDICTED: NAC domain-containing protein 18-like | ||||
TrEMBL | A0A1U7XNA6 | 0.0 | A0A1U7XNA6_NICSY; NAC domain-containing protein 18-like | ||||
STRING | XP_009793522.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15567 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 6e-21 | NAC domain containing protein 86 |