PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793339.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 338aa    MW: 40006.9 Da    PI: 8.8277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-1725116198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+   ++  + rl++p kf+ +  + + +     +l+ +sg++W+v++  ++ ++ yv+ +GW++Fvk++ L+e D +vFk+++ s+f   v
  XP_009793339.1  25 FFKVM---MNDFRPRLRIPHKFVINLkD-SYKLLGRKILRGPSGNTWTVEV-KKREDNDYVFCNGWEQFVKDHCLEEADLLVFKMKSFSCF--DV 112
                     77877...4455668********88853.4444446678************.4666667*************************7655999..88 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++f+
  XP_009793339.1 113 TIFD 116
                     8876 PP
2B354.91.6e-17242322689
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +++ +  +g+l lpkk a++++ kk e  t+ l+  +sgr+W v +  + ++++ v+++GW++Fv +n+L+e D++vF+l +  +
  XP_009793339.1 242 MQPTHVYLGQLKLPKKLANRYMRKKYE--TINLRIpSSGRRWAVAV--SYRQEGLVMQSGWEDFVMDNDLEEFDICVFELAQGGK 322
                     4666667789***********988766..6777765789*******..777778*************************986543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2121120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.67522118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-2122123IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-2123116No hitNo description
PfamPF023622.7E-1425115IPR003340B3 DNA binding domain
SMARTSM010192.5E-1325118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-23231329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-21232322IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-13236317No hitNo description
PROSITE profilePS5086312.379237332IPR003340B3 DNA binding domain
SMARTSM010192.7E-11238333IPR003340B3 DNA binding domain
PfamPF023622.2E-15241325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MATTCERCKV IEKQKYWEEF DKHRFFKVMM NDFRPRLRIP HKFVINLKDS YKLLGRKILR  60
GPSGNTWTVE VKKREDNDYV FCNGWEQFVK DHCLEEADLL VFKMKSFSCF DVTIFDLSAC  120
EKEETFFVKK NRNPCKHPDE VTDEHTSDQE ESSENGHSTE EESYGKKYVF HSSQLRKGKK  180
MKKILIAKQQ INRKRECTPS STCKRNIEPE EKMPIFSNRH REEVFQQASR HKSSVPSFLM  240
TMQPTHVYLG QLKLPKKLAN RYMRKKYETI NLRIPSSGRR WAVAVSYRQE GLVMQSGWED  300
FVMDNDLEEF DICVFELAQG GKHNLIPVVL DVYIYTSC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793339.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_009793340.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1U7Y2670.0A0A1U7Y267_NICSY; B3 domain-containing protein REM16-like
STRINGXP_009793339.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-33B3 family protein