PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793240.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 280aa    MW: 31193.9 Da    PI: 7.4039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.21.7e-23126185258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYG K + g+++pr YYrC+ +   +C+++k v+rs+++ +v+e++Y g+H +
  XP_009793240.1 126 EDGYSWRKYGHKYILGAKHPREYYRCARRrlsSCTATKMVQRSDTEATVFEVIYGGSHSC 185
                     7**************************998999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-24113187IPR003657WRKY domain
PROSITE profilePS5081118.556120184IPR003657WRKY domain
SuperFamilySSF1182901.83E-21122187IPR003657WRKY domain
SMARTSM007746.7E-28125187IPR003657WRKY domain
PfamPF031062.3E-22126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGEENCWERE VAITELTKGR ELMCQLQKHF DPMKQDVCQY LSVEILSSYD KALSLLNGTA  60
LSGMNKGKQI SNPAPSSSTG KLESLHLLAD ASTKSSDRPC NSMKRKMVSR RTEYVRARSG  120
EEVPPEDGYS WRKYGHKYIL GAKHPREYYR CARRRLSSCT ATKMVQRSDT EATVFEVIYG  180
GSHSCGQESK LQQNGELVAA LTKETQCDEA GRRGEISESY FTEMVSTPNT SFNNSSTGIV  240
NSNSILNMTN SDIMTTPTSA HAEGNSLAED LWTTFFSTLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-13126185968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793240.10.0PREDICTED: probable WRKY transcription factor 41
RefseqXP_009793241.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U7Y3830.0A0A1U7Y383_NICSY; probable WRKY transcription factor 41
STRINGXP_009793240.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-34WRKY family protein