PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 454aa MW: 49433.7 Da PI: 6.7884 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 391 | 436 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L Av+YIk+L+ XP_009793127.1 391 SIAERVRRTKISDRMRRLQDLVPNM----DKQTNTADMLDFAVDYIKELE 436 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.907 | 385 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 388 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-11 | 389 | 440 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.1E-15 | 390 | 446 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-12 | 391 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 391 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITSGGCGYA RDDFSQLQNS 60 RGSNSTDIEQ VFAKFVASIG NQGSNSGSFS STQQIQDNPT SNMNVRSDFI VPKQEVKQQH 120 ERLTRHRSSD YSLVSLMNYQ TQAQQQSQSQ FISSVKQEPE MNYQNLAPQR IDNSKVATSL 180 AAVDNSFTFM TSVNSTGVSP VNIGGRVGAG AGVGVGGGNT NLTRYNSSPA GFFDLINIEN 240 GSYGTGANAT TEASLLSSKR FKTQVGISSG KPPASPGLMT PISEIGDKVV EENSIGDEQK 300 NDESCITDFP IPSWEDSHIL SDDFLKAEDI EIEPFSNVNA SNIQNSEGLS RPPIPLSHHL 360 SLPTSTLEKL LQDSTPLNVR AKRGCATHPR SIAERVRRTK ISDRMRRLQD LVPNMDKQTN 420 TADMLDFAVD YIKELEKQVK ILAEKRAKCT CTNK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793127.1 | 0.0 | PREDICTED: uncharacterized protein LOC104240039 isoform X2 | ||||
Swissprot | Q9C690 | 1e-47 | BH122_ARATH; Transcription factor bHLH122 | ||||
TrEMBL | A0A1U7XM54 | 0.0 | A0A1U7XM54_NICSY; uncharacterized protein LOC104240039 isoform X2 | ||||
STRING | XP_009793126.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-40 | bHLH family protein |
Publications ? help Back to Top | |||
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