PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792605.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 146aa    MW: 16366.1 Da    PI: 7.8049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792605.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-12441191496
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ lp k + e   g+     +  ++ + +g++W++ ++ ++++    +++GWk Fv++n+Lk gD +vF+l + s++++++kv
  XP_009792605.1  44 YMMFLPAKICPELtpGE-----V-PVVLTCRGKKWDMFCSGDNQR---RFKQGWKFFVNDNNLKIGDGLVFELLECSRAKMTFKV 119
                     56677777776663222.....2.2456679********544444...4899********************7644555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1528122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1428123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-1429123No hitNo description
PROSITE profilePS5086311.87131125IPR003340B3 DNA binding domain
SMARTSM010190.002931125IPR003340B3 DNA binding domain
PfamPF023621.1E-1043119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MKGPAKNAKI GKSMAGSKDE DISPLCGKPY FDFILGQSNL EPKYMMFLPA KICPELTPGE  60
VPVVLTCRGK KWDMFCSGDN QRRFKQGWKF FVNDNNLKIG DGLVFELLEC SRAKMTFKVQ  120
ILRGDFPAEL TTEPEDGTPE NPIVLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792605.11e-104PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1U7Y1E41e-103A0A1U7Y1E4_NICSY; B3 domain-containing protein Os04g0386900-like
STRINGXP_009792605.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-06B3 family protein