PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009791966.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 331aa MW: 38228.4 Da PI: 6.5066

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.4	2.8e-53	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yLkkkv+++k++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_009791966.1 15 VPPGFRFHPTEEELLQYYLKKKVANEKIDL-DVIQEVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 108 69**************************.9***********964444222455******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++ +g++ktLvfykgrap+g+k+dW+mheyrl XP_009791966.1 109 YS-NSRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 .9999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-59	9	177	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	15	177	IPR003441	NAC domain
Pfam	PF02365	2.6E-28	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009809	Biological Process	lignin biosynthetic process
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0009901	Biological Process	anther dehiscence
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MPDDMSISVN GQSQVPPGFR FHPTEEELLQ YYLKKKVANE KIDLDVIQEV DLNKLEPWDI 60 QEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NSRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDHINDH SCNIVCNVAM GESTQEEGWV VCRIFKKKNH 180 FKSLEMVNPS ISDTRINQRL YPNDEGALEQ LLQYMRNTCK EENHANYDLN FNDKFMQLPT 240 LDSPNSSYGD FPKSINSEGG LNNWIAVDRL VASHLNGQTN DNYNHDYQHQ YNSNGGGGST 300 NHDYNEECDL WSFSRVSTND HSLCHVSNIP V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-51	9	183	9	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00321	DAP	Transfer from AT2G46770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ686944	0.0	JQ686944.1 Nicotiana tabacum cultivar SR1 NAC secondary wall thickening promoting factor 3 (NST3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791966.1	0.0	PREDICTED: NAC domain-containing protein 43-like
Refseq	XP_016450002.1	0.0	PREDICTED: NAC domain-containing protein 43-like
Swissprot	Q84WP6	1e-122	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A1S3YDD0	0.0	A0A1S3YDD0_TOBAC; NAC domain-containing protein 43-like
TrEMBL	A0A1U7XQR7	0.0	A0A1U7XQR7_NICSY; NAC domain-containing protein 43-like
STRING	XP_009791966.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-113	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]