PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009791625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 276aa MW: 30367.8 Da PI: 6.3074 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26 | 2.1e-08 | 90 | 136 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r N+eA r++R++Kka+ + Le++v L a N++L k+l+ XP_009791625.1 90 KGKKRPVGNKEAVRKYREKKKARAASLEDEVIRLRAINQQLFKRLQG 136 66788899**********************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-13 | 80 | 154 | No hit | No description |
SMART | SM00338 | 1.3E-7 | 85 | 153 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.7E-13 | 87 | 135 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 4.36E-10 | 92 | 145 | No hit | No description |
SuperFamily | SSF57959 | 3.19E-6 | 92 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MMADGELEFS NQEMLSSSNF GEFSSSMDSF FNEILKDTHA CTHAHTCNPP GPDNSHTHTC 60 YHVHTKFVPP SEEDEDKNPS DDTAESSEKK GKKRPVGNKE AVRKYREKKK ARAASLEDEV 120 IRLRAINQQL FKRLQGQAVL EAEVARLKCL LVDIRGRIEG EIGSFPYQKP MKSGNVYQNV 180 VNPNIPGSYV VNSCNLQCDD QVYCLHPGAE VKSSDGTVLN GQGFNNCEFE TLQCLGNQTS 240 GMEEVPCPMD NGTPTPTANT SGRSKRKGGA RTTTAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791619.1 | 0.0 | PREDICTED: uncharacterized protein LOC104238836 | ||||
Refseq | XP_009791625.1 | 0.0 | PREDICTED: uncharacterized protein LOC104238836 | ||||
Refseq | XP_016513116.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_016513124.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Swissprot | Q8GTS2 | 1e-107 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A1S4DI90 | 0.0 | A0A1S4DI90_TOBAC; basic leucine zipper 23-like | ||||
TrEMBL | A0A1U7XYL6 | 0.0 | A0A1U7XYL6_NICSY; uncharacterized protein LOC104238836 | ||||
STRING | XP_009791619.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 4e-91 | bZIP family protein |
Publications ? help Back to Top | |||
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